Access the full text.
Sign up today, get DeepDyve free for 14 days.
Chenyang Wang, Qiurong Li, Jie‐shou Li (2018)
Gut microbiota and its implications in small bowel transplantationFrontiers of Medicine, 12
Aurore Dougé, J. Bay, Aurélie Ravinet, Julien Scanzi (2020)
[Intestinal microbiota and allogeneic stem cell transplantation].Bulletin du cancer
(2006)
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB, 72
C. Roca-Oporto, Tania Cebrero-Cangueiro, M. Gil-Marqués, Gema Labrador-Herrera, Y. Smani, F. Gonzalez-Roncero, L. Marín, J. Pachón, M. Pachón-Ibáñez, E. Cordero (2019)
Prevalence and clinical impact of Streptococcus pneumoniae nasopharyngeal carriage in solid organ transplant recipientsBMC Infectious Diseases, 19
J. Caporaso, Justin Kuczynski, Jesse Stombaugh, K. Bittinger, F. Bushman, E. Costello, N. Fierer, Antonio Peña, Julia Goodrich, J. Gordon, G. Huttley, S. Kelley, D. Knights, J. Koenig, R. Ley, C. Lozupone, Daniel McDonald, B. Muegge, M. Pirrung, Jens Reeder, Joel Sevinsky, P. Turnbaugh, William Walters, Jeremy Widmann, Tanya Yatsunenko, Jesse Zaneveld, R. Knight (2010)
QIIME allows analysis of high-throughput community sequencing dataNature Methods, 7
O. Chávez-Talavera, A. Tailleux, P. Lefebvre, B. Staels (2017)
Bile acid control of metabolism and inflammation in obesity, type 2 diabetes, dyslipidemia and NAFLD.Gastroenterology
Kendra Walters, J. Martiny (2020)
Alpha-, beta-, and gamma-diversity of bacteria varies across habitatsPLoS ONE, 15
(2019)
Gut microbiota dysbiosis is associated with altered bile acid metabolism in infantile cholestasis, 4
(2022)
Synbiotics, prebiotics and probiotics for solid organ transplant recipients, 9
J. Cole, Qiong Wang, Erick Cardenas, Jordan Fish, Benli Chai, Ryan Farris, A. Kulam-Syed-Mohideen, Donna McGarrell, T. Marsh, G. Garrity, J. Tiedje (2008)
The Ribosomal Database Project: improved alignments and new tools for rRNA analysisNucleic Acids Research, 37
Xiao-qiang Wu, G. Cao, Zhi-wei Wang, Xuan Wu, X. Tian, Y. Gu, F. Shao, T. Yan (2022)
Antibiotic ampicillin induces immune tolerance in renal transplantation by regulating the proportion of intestinal flora in miceFrontiers in Cellular and Infection Microbiology, 12
(2013)
Bile acid metabolism and signaling, 3
(2014)
Gut microbial community structure and complications after kidney transplantation: a pilot study, 98
Yinghui Huang, Wang Xin, Jiachuan Xiong, Mengying Yao, Bo Zhang, Jinghong Zhao (2022)
The Intestinal Microbiota and Metabolites in the Gut-Kidney-Heart Axis of Chronic Kidney DiseaseFrontiers in Pharmacology, 13
C. Cao, Han Zhu, Ying Yao, R. Zeng (2022)
Gut Dysbiosis and Kidney DiseasesFrontiers in Medicine, 9
(2021)
Intestinal microbiome and metabolome analyses reveal metabolic disorders in the early stage of renal transplantation, 17
A. Mantovani, C. Zusi (2020)
PNPLA3 gene and kidney disease, 1
S. Sinha, Yeneneh Haileselassie, L. Nguyen, C. Tropini, Min Wang, L. Becker, Davis Sim, Karolin Jarr, Estelle Spear, Gulshan Singh, H. Namkoong, K. Bittinger, M. Fischbach, J. Sonnenburg, Aida Habtezion (2020)
Dysbiosis-Induced Secondary Bile Acid Deficiency Promotes Intestinal Inflammation.Cell host & microbe
Y. Shono, M. Brink (2018)
Gut microbiota injury in allogeneic haematopoietic stem cell transplantationNature Reviews Cancer, 18
Wei Jia, G. Xie, Weiping Jia (2018)
Bile acid–microbiota crosstalk in gastrointestinal inflammation and carcinogenesisNature Reviews Gastroenterology & Hepatology, 15
(2015)
The gut microbiome: a clinically significant player in transplantation?, 11
I. Rashid, Pooja Katravath, P. Tiwari, S. D’Cruz, S. Jaswal, G. Sahu (2022)
Hyperuricemia—a serious complication among patients with chronic kidney disease: a systematic review and meta-analysisExploration of Medicine
K. Mullane, E. Dubberke (2019)
Management of Clostridioides (formerly Clostridium) difficile infection (CDI) in solid organ transplant recipients: Guidelines from the American Society of Transplantation Community of PracticeClinical Transplantation, 33
S. Kouidhi, O. Zidi, Muhanad Alhujaily, Nessrine Souai, A. Mosbah, Tareg Belali, K. Ghedira, I. Kossai, Jamelddine Manaa, W. Mnif, A. Cherif (2021)
Fecal Metabolomics Reveals Distinct Profiles of Kidney Transplant Recipients and Healthy ControlsDiagnostics, 11
E. Stavropoulou, K. Kantartzi, C. Tsigalou, Theoharis Konstantinidis, G. Romanidou, C. Voidarou, E. Bezirtzoglou (2021)
Focus on the Gut–Kidney Axis in Health and DiseaseFrontiers in Medicine, 7
C. Huttenhower, D. Gevers, R. Knight, Sahar Abubucker, J. Badger, A. Chinwalla, H. Creasy, A. Earl, Michael Fitzgerald, R. Fulton, M. Giglio, Kymberlie Hallsworth-Pepin, E. Lobos, R. Madupu, V. Magrini, John Martin, M. Mitreva, D. Muzny, E. Sodergren, J. Versalovic, A. Wollam, K. Worley, J. Wortman, Sarah Young, Qiandong Zeng, K. Aagaard, Olukemi Abolude, E. Allen-Vercoe, E. Alm, Lucia Alvarado, G. Andersen, S. Anderson, Elizabeth Appelbaum, H. Arachchi, G. Armitage, Cesar Arze, T. Ayvaz, Carl Baker, L. Begg, Tsegahiwot Belachew, Veena Bhonagiri, Monika Bihan, M. Blaser, Toby Bloom, Vivien Bonazzi, J. Brooks, G. Buck, C. Buhay, D. Busam, Joseph Campbell, S. Canon, B. Cantarel, P. Chain, I. Chen, Lei Chen, Shaila Chhibba, Ken Chu, Dawn Ciulla, J. Clemente, S. Clifton, S. Conlan, J. Crabtree, M. Cutting, Noam Davidovics, Catherine Davis, T. DeSantis, C. Deal, Kimberley Delehaunty, F. Dewhirst, E. Deych, Yan Ding, D. Dooling, Shannon Dugan, W. Dunne, A. Durkin, Robert Edgar, R. Erlich, Candace Farmer, R. Farrell, Karoline Faust, M. Feldgarden, Victor Felix, Sheila Fisher, A. Fodor, L. Forney, Les Foster, V. Francesco, Jonathan Friedman, Dennis Friedrich, C. Fronick, L. Fulton, Hongyu Gao, Nathalia Garcia, G. Giannoukos, C. Giblin, Maria Giovanni, J. Goldberg, Johannes Goll, Antonio Gonzalez, Allison Griggs, Sharvari Gujja, S. Haake, B. Haas, Holli Hamilton, Emily Harris, Theresa Hepburn, Brandi Herter, D. Hoffmann, M. Holder, Clinton Howarth, Katherine Huang, S. Huse, J. Izard, J. Jansson, Huaiyang Jiang, Catherine Jordan, Vandita Joshi, J. Katancik, W. Keitel, S. Kelley, C. Kells, N. King, D. Knights, H. Kong, O. Koren, S. Koren, Karthik Kota, C. Kovar, N. Kyrpides, P. Rosa, Sandy Lee, K. Lemon, N. Lennon, Cecil Lewis, L. Lewis, R. Ley, Kelvin Li, K. Liolios, Bo Liu, Yue Liu, C. Lo, C. Lozupone, R. Lunsford, T. Madden, A. Mahurkar, P. Mannon, E. Mardis, V. Markowitz, K. Mavromatis, J. McCorrison, Daniel McDonald, J. Mcewen, A. McGuire, P. Mcinnes, Teena Mehta, K. Mihindukulasuriya, J. Miller, P. Minx, I. Newsham, C. Nusbaum, M. O'Laughlin, Joshua Orvis, I. Pagani, Krishna Palaniappan, Shital Patel, Matthew Pearson, Jane Peterson, M. Podar, C. Pohl, K. Pollard, Mihai Pop, M. Priest, L. Proctor, X. Qin, J. Raes, J. Ravel, J. Reid, Mina Rho, R. Rhodes, Kevin Riehle, M. Rivera, B. Rodriguez-Mueller, Y. Rogers, M. Ross, C. Russ, Ravi Sanka, P. Sankar, J. Sathirapongsasuti, J. Schloss, P. Schloss, T. Schmidt, M. Scholz, L. Schriml, Alyxandria Schubert, N. Segata, J. Segre, W. Shannon, R. Sharp, T. Sharpton, N. Shenoy, N. Sheth, Gina Simone, Indresh Singh, C. Smillie, J. Sobel, Daniel Sommer, P. Spicer, G. Sutton, S. Sykes, D. Tabbaa, M. Thiagarajan, Chad Tomlinson, M. Torralba, T. Treangen, R. Truty, T. Vishnivetskaya, Jason Walker, Lu Wang, Zhengyuan Wang, D. Ward, W. Warren, M. Watson, Christopher Wellington, K. Wetterstrand, J. White, Katarzyna Wilczek-Boney, Yuanqing Wu, K. Wylie, T. Wylie, C. Yandava, Liang Ye, Yuzhen Ye, Shibu Yooseph, Bonnie Youmans, Lan Zhang, Yanjiao Zhou, Yiming Zhu, L. Zoloth, Jeremy Zucker, B. Birren, R. Gibbs, S. Highlander, B. Methé, K. Nelson, J. Petrosino, G. Weinstock, R. Wilson, O. White (2012)
Structure, Function and Diversity of the Healthy Human MicrobiomeNature, 486
(2018)
Organ transplantation and gut microbiota: current reviews and future challenges, 10
Christian Quast, E. Pruesse, Pelin Yilmaz, Jan Gerken, Timmy Schweer, P. Yarza, J. Peplies, F. Glöckner (2012)
The SILVA ribosomal RNA gene database project: improved data processing and web-based toolsNucleic Acids Research, 41
Myung-Gyu Kim, Jihyun Yang, S. Jo (2021)
Intestinal microbiota and kidney diseasesKidney Research and Clinical Practice, 40
M. Salvadori, A. Tsalouchos (2021)
Microbiota, renal disease and renal transplantationWorld Journal of Transplantation, 11
C. Staley, Alexa Weingarden, A. Khoruts, M. Sadowsky (2016)
Interaction of gut microbiota with bile acid metabolism and its influence on disease statesApplied Microbiology and Biotechnology, 101
(2015)
Extensively drug-resistant Pseudomonas aeruginosa bacteremia in solid organ transplant recipients, 99
M. Kanehisa, S. Goto, Yoko Sato, Miho Furumichi, M. Tanabe (2011)
KEGG for integration and interpretation of large-scale molecular data setsNucleic Acids Research, 40
(2020)
Risk Factors for Acquisition of Carbapenem-resistant Klebsiella pneumoniae and mortality among abdominal solid organ transplant recipients with K. pneumoniae infections, 26
(1989)
Hyperlipidemia after organ transplantation, 87
Simon Ville, Amandine Ydée, C. Garandeau, Emmanuel Canet, A. Tissot, D. Cantarovich, V. Frémeaux-Bacchi, P. Mariani‐Kurkdjian, F. Provôt, F. Fakhouri (2019)
Shiga toxin-producing Escherichia coli-associated hemolytic uremic syndrome in solid organ transplant recipients.Kidney international, 96 6
J. Fryer, David Grant, Jifu Jiang, P. Metrakos, N. Ozçay, Carol Ford, B. Garcia, Ronald Behme, R. Zhong (1996)
Influence of macrophage depletion on bacterial translocation and rejection in small bowel transplantation.Transplantation, 62 5
H. Maughan, Pauline Wang, Julio Caballero, Pauline Fung, Y. Gong, S. Donaldson, Lijie Yuan, S. Keshavjee, Yu Zhang, Y. Yau, V. Waters, D. Tullis, D. Hwang, D. Guttman (2012)
Analysis of the Cystic Fibrosis Lung Microbiota via Serial Illumina Sequencing of Bacterial 16S rRNA Hypervariable RegionsPLoS ONE, 7
P. Romagnani, G. Remuzzi, R. Glassock, A. Levin, K. Jager, M. Tonelli, Z. Massy, C. Wanner, H. Anders (2017)
Chronic kidney diseaseNature Reviews Disease Primers, 3
B. Humphreys (2018)
Mechanisms of Renal Fibrosis.Annual review of physiology, 80
N. Segata, J. Izard, L. Waldron, D. Gevers, L. Miropolsky, W. Garrett, C. Huttenhower (2011)
Metagenomic biomarker discovery and explanationGenome Biology, 12
R. Ley, D. Peterson, J. Gordon (2006)
Ecological and Evolutionary Forces Shaping Microbial Diversity in the Human IntestineCell, 124
Nicholas Mercuro, C. Gill, Rachel Kenney, G. Alangaden, S. Davis (2020)
Treatment and outcomes of Enterococcus faecium bloodstream infections in solid organ transplant recipientsTransplant Infectious Disease, 22
(2017)
Bile acid control of metabolism and inflammation in obesity, type 2 diabetes, dyslipidemia, and nonalcoholic fatty liver disease, 152
J. Vossen, H. Guiot, A. Lankester, A. Vossen, R. Bredius, R. Wolterbeek, H. Bakker, P. Heidt (2014)
Complete Suppression of the Gut Microbiome Prevents Acute Graft-Versus-Host Disease following Allogeneic Bone Marrow TransplantationPLoS ONE, 9
Yingliang Zhao (2022)
Recent advances of gut microbiota in chronic kidney disease patientsExploration of Medicine
Anastasia Geladari, T. Karampatakis, C. Antachopoulos, E. Iosifidis, Olga Tsiatsiou, Lida Politi, Aggeliki Karyoti, V. Papanikolaou, A. Tsakris, E. Roilides (2017)
Epidemiological surveillance of multidrug‐resistant gram‐negative bacteria in a solid organ transplantation departmentTransplant Infectious Disease, 19
Abstract The present study sought to characterise the gut microbiota of subjects with kidney transplantation and healthy control to identify the distinct gut microbiota and analyse their potential function. We found that gut microbiota abundance had significant differences in subjects between the two groups. Line Discriminant Analysis (LDA) Effect Size (LEfSe) analysis showed that the bacterial taxa were differentially represented between the two groups, and the potential biomarkers at different taxonomic levels in kidney transplant recipients were Streptococcus, Enterococcaceae, and Ruminococcus. Phylogenetic investigation of communities by reconstruction of unobserved states (PICRUSt) Functional Inference analyses suggested that the difference in gut microbiota between the two groups was correlated with bile acid metabolism. In conclusion, gut microbiota abundance is different between the two groups, which is related to bile acid metabolism, and may influence the metabolic homeostasis of allograft recipients.
Archives of Physiology and Biochemistry – Taylor & Francis
Published: May 18, 2023
Keywords: Gut microbial diversity; 16S rRNA gene sequencing; kidney transplantation; bile acid metabolism
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.